3D structure

PDB id
5IBB (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAVal in the A-site
Experimental method
X-RAY DIFFRACTION
Resolution
2.96 Å

Loop

Sequence
CUUG*CAG*CUUACG
Length
13 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_5IBB_033 not in the Motif Atlas
Homologous match to J3_4LFB_005
Geometric discrepancy: 0.183
The information below is about J3_4LFB_005
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_84394.1
Basepair signature
cWW-tWH-F-F-cWW-F-cWW-F
Number of instances in this motif group
2

Unit IDs

5IBB|1|1G|C|990
5IBB|1|1G|U|991
5IBB|1|1G|U|992
5IBB|1|1G|G|993
*
5IBB|1|1G|C|1045
5IBB|1|1G|A|1046
5IBB|1|1G|G|1047
*
5IBB|1|1G|C|1210
5IBB|1|1G|U|1211
5IBB|1|1G|U|1212
5IBB|1|1G|A|1213
5IBB|1|1G|C|1214
5IBB|1|1G|G|1215

Current chains

Chain 1G
16S ribosomal RNA

Nearby chains

Chain 5A
30S ribosomal protein S14 type Z

Coloring options:


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