J3_5IBB_037

3D structure

PDB id

5IBB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAVal in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

2.96 Å

Loop

Sequence

CGC*GGACUGC*GAGGAAGGAG

Length

20 nucleotides

Bulged bases

5IBB|1|1G|A|1183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5IBB_037 not in the Motif Atlas

Homologous match to J3_4LFB_018

Geometric discrepancy: 0.2537

The information below is about J3_4LFB_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17791.2

Basepair signature

cWW-F-cHW-cWW-tWH-cWW-F-tSW-tWS-cSH-cWW-cWW

Number of instances in this motif group

2

Unit IDs

5IBB|1|1G|C|1116
5IBB|1|1G|G|1117
5IBB|1|1G|C|1118
*
5IBB|1|1G|G|1155
5IBB|1|1G|G|1156
5IBB|1|1G|A|1157
5IBB|1|1G|C|1158
5IBB|1|1G|U|1159
5IBB|1|1G|G|1160
5IBB|1|1G|C|1161
*
5IBB|1|1G|G|1175
5IBB|1|1G|A|1176
5IBB|1|1G|G|1177
5IBB|1|1G|G|1178
5IBB|1|1G|A|1179
5IBB|1|1G|A|1180
5IBB|1|1G|G|1181
5IBB|1|1G|G|1182
5IBB|1|1G|A|1183
5IBB|1|1G|G|1184

Current chains

Chain 1G

16S ribosomal RNA

Nearby chains

Chain 12

30S ribosomal protein S2

Chain 5A

30S ribosomal protein S14 type Z

Chain 82

30S ribosomal protein S9