J3_5IBB_058

3D structure

PDB id

5IBB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAVal in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

2.96 Å

Loop

Sequence

CGAAG*CGCCAGAGAG*CGUAG

Length

20 nucleotides

Bulged bases

5IBB|1|14|G|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5IBB_058 not in the Motif Atlas

Homologous match to J3_9DFE_006

Geometric discrepancy: 0.06

The information below is about J3_9DFE_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

5IBB|1|14|C|297
5IBB|1|14|G|298
5IBB|1|14|A|299
5IBB|1|14|A|300
5IBB|1|14|G|301
*
5IBB|1|14|C|316
5IBB|1|14|G|317
5IBB|1|14|C|318
5IBB|1|14|C|319
5IBB|1|14|A|320
5IBB|1|14|G|321
5IBB|1|14|A|322
5IBB|1|14|G|323
5IBB|1|14|A|324
5IBB|1|14|G|325
*
5IBB|1|14|C|337
5IBB|1|14|G|338
5IBB|1|14|U|339
5IBB|1|14|A|340
5IBB|1|14|G|341

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 39

50S ribosomal protein L4

Chain C5

50S ribosomal protein L24