J3_5IMQ_024
3D structure
- PDB id
- 5IMQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of ribosome bound to cofactor at 3.8 angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CUCG*CGAUAGCGCACCAGUAC*GGAAAG
- Length
- 27 nucleotides
- Bulged bases
- 5IMQ|1|D|C|34, 5IMQ|1|D|U|448, 5IMQ|1|D|C|455, 5IMQ|1|D|C|456
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5IMQ_024 not in the Motif Atlas
- Homologous match to J3_9DFE_003
- Geometric discrepancy: 0.2775
- The information below is about J3_9DFE_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_07616.1
- Basepair signature
- cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
- Number of instances in this motif group
- 10
Unit IDs
5IMQ|1|D|C|32
5IMQ|1|D|U|33
5IMQ|1|D|C|34
5IMQ|1|D|G|35
*
5IMQ|1|D|C|445
5IMQ|1|D|G|446
5IMQ|1|D|A|447
5IMQ|1|D|U|448
5IMQ|1|D|A|449
5IMQ|1|D|G|450
5IMQ|1|D|C|451
5IMQ|1|D|G|452
5IMQ|1|D|C|453
5IMQ|1|D|A|454
5IMQ|1|D|C|455
5IMQ|1|D|C|456
5IMQ|1|D|A|457
5IMQ|1|D|G|458
5IMQ|1|D|U|459
5IMQ|1|D|A|460
5IMQ|1|D|C|461
*
5IMQ|1|D|G|468
5IMQ|1|D|G|469
5IMQ|1|D|A|470
5IMQ|1|D|A|471
5IMQ|1|D|A|472
5IMQ|1|D|G|473
Current chains
- Chain D
- 23S ribosomal RNA
Nearby chains
- Chain c
- 50S ribosomal protein L4
- Chain m
- 50S ribosomal protein L20
- Chain p
- 50S ribosomal protein L23
- Chain y
- 50S ribosomal protein L34
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