J3_5IMR_009

3D structure

PDB id

5IMR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosome bound to cofactor at 5.7 angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

AC*GAUAAGC*GAUGU

Length

14 nucleotides

Bulged bases

5IMR|1|D|A|74

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5IMR_009 not in the Motif Atlas

Geometric match to J3_4WF9_013

Geometric discrepancy: 0.3159

The information below is about J3_4WF9_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_35667.2

Basepair signature

cWW-cWW-F-F-F-cWW-F-cWW

Number of instances in this motif group

7

Unit IDs

5IMR|1|D|A|56
5IMR|1|D|C|57
*
5IMR|1|D|G|70
5IMR|1|D|A|71
5IMR|1|D|U|72
5IMR|1|D|A|73
5IMR|1|D|A|74
5IMR|1|D|G|75
5IMR|1|D|C|76
*
5IMR|1|D|G|110
5IMR|1|D|A|111
5IMR|1|D|U|112
5IMR|1|D|G|113
5IMR|1|D|U|114

Current chains

Chain D

23S ribosomal RNA

Nearby chains

Chain p

50S ribosomal protein L23

Chain t

50S ribosomal protein L29

Chain y

50S ribosomal protein L34