J3_5IMR_010

3D structure

PDB id

5IMR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosome bound to cofactor at 5.7 angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

GCGAGCUAGC*GCUAGGAGU*GCUAACCGAGC

Length

30 nucleotides

Bulged bases

5IMR|1|D|G|686, 5IMR|1|D|A|788, 5IMR|1|D|A|789, 5IMR|1|D|C|790, 5IMR|1|D|G|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5IMR|1|D|G|682
5IMR|1|D|C|683
5IMR|1|D|G|684
5IMR|1|D|A|685
5IMR|1|D|G|686
5IMR|1|D|C|687
5IMR|1|D|U|688
5IMR|1|D|A|689
5IMR|1|D|G|690
5IMR|1|D|C|691
*
5IMR|1|D|G|771
5IMR|1|D|C|772
5IMR|1|D|U|773
5IMR|1|D|A|774
5IMR|1|D|G|775
5IMR|1|D|G|776
5IMR|1|D|A|777
5IMR|1|D|G|778
5IMR|1|D|U|779
*
5IMR|1|D|G|785
5IMR|1|D|C|786
5IMR|1|D|U|787
5IMR|1|D|A|788
5IMR|1|D|A|789
5IMR|1|D|C|790
5IMR|1|D|C|791
5IMR|1|D|G|792
5IMR|1|D|A|793
5IMR|1|D|G|794
5IMR|1|D|C|795

Current chains

Chain D

23S ribosomal RNA

Nearby chains

Chain a

50S ribosomal protein L2

Chain c

50S ribosomal protein L4

Chain o

50S ribosomal protein L22

Chain y

50S ribosomal protein L34