J3_5IMR_017

3D structure

PDB id

5IMR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosome bound to cofactor at 5.7 angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

CCC*GGUGGAU*AAUCG

Length

15 nucleotides

Bulged bases

5IMR|1|D|G|2833

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5IMR|1|D|C|2814
5IMR|1|D|C|2815
5IMR|1|D|C|2816
*
5IMR|1|D|G|2830
5IMR|1|D|G|2831
5IMR|1|D|U|2832
5IMR|1|D|G|2833
5IMR|1|D|G|2834
5IMR|1|D|A|2835
5IMR|1|D|U|2836
*
5IMR|1|D|A|2882
5IMR|1|D|A|2883
5IMR|1|D|U|2884
5IMR|1|D|C|2885
5IMR|1|D|G|2886

Current chains

Chain D

23S ribosomal RNA

Nearby chains

Chain b

50S ribosomal protein L3

Chain j

50S ribosomal protein L17

Chain l

50S ribosomal protein L19

Chain w

50S ribosomal protein L32