J3_5IMR_021
3D structure
- PDB id
- 5IMR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of ribosome bound to cofactor at 5.7 angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.7 Å
Loop
- Sequence
- GCGGCC*GGCUAGA*UGACGC
- Length
- 19 nucleotides
- Bulged bases
- 5IMR|1|A|A|653
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5IMR_021 not in the Motif Atlas
- Homologous match to J3_6CZR_060
- Geometric discrepancy: 0.5468
- The information below is about J3_6CZR_060
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_72319.1
- Basepair signature
- cWW-F-F-F-F-tWH-F-F-cWW-cWW-cWW-F
- Number of instances in this motif group
- 1
Unit IDs
5IMR|1|A|G|585
5IMR|1|A|C|586
5IMR|1|A|G|587
5IMR|1|A|G|588
5IMR|1|A|C|589
5IMR|1|A|C|590
*
5IMR|1|A|G|649
5IMR|1|A|G|650
5IMR|1|A|C|651
5IMR|1|A|U|652
5IMR|1|A|A|653
5IMR|1|A|G|654
5IMR|1|A|A|655
*
5IMR|1|A|U|751
5IMR|1|A|G|752
5IMR|1|A|A|753
5IMR|1|A|C|754
5IMR|1|A|G|755
5IMR|1|A|C|756
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain L
- 30S ribosomal protein S8
- Chain P
- 30S ribosomal protein S12
- Chain S
- 30S ribosomal protein S15
- Chain U
- 30S ribosomal protein S17
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