J3_5IMR_022

3D structure

PDB id

5IMR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosome bound to cofactor at 5.7 angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

GGUG*CGCCGAUGG*CAGCC

Length

18 nucleotides

Bulged bases

5IMR|1|A|U|723

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5IMR|1|A|G|670
5IMR|1|A|G|671
5IMR|1|A|U|672
5IMR|1|A|G|673
*
5IMR|1|A|C|717
5IMR|1|A|G|718
5IMR|1|A|C|719
5IMR|1|A|C|720
5IMR|1|A|G|721
5IMR|1|A|A|722
5IMR|1|A|U|723
5IMR|1|A|G|724
5IMR|1|A|G|725
*
5IMR|1|A|C|732
5IMR|1|A|A|733
5IMR|1|A|G|734
5IMR|1|A|C|735
5IMR|1|A|C|736

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain J

30S ribosomal protein S6

Chain O

30S ribosomal protein S11

Chain S

30S ribosomal protein S15

Chain V

30S ribosomal protein S18