J3_5IMR_024
3D structure
- PDB id
- 5IMR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of ribosome bound to cofactor at 5.7 angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.7 Å
Loop
- Sequence
- GGUUUAAUUC*GAAGAACCUUACC*GGGCGACAC
- Length
- 32 nucleotides
- Bulged bases
- 5IMR|1|A|A|975, 5IMR|1|A|G|976, 5IMR|1|A|A|977, 5IMR|1|A|A|978, 5IMR|1|A|G|1224
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5IMR|1|A|G|953
5IMR|1|A|G|954
5IMR|1|A|U|955
5IMR|1|A|U|956
5IMR|1|A|U|957
5IMR|1|A|A|958
5IMR|1|A|A|959
5IMR|1|A|U|960
5IMR|1|A|U|961
5IMR|1|A|C|962
*
5IMR|1|A|G|973
5IMR|1|A|A|974
5IMR|1|A|A|975
5IMR|1|A|G|976
5IMR|1|A|A|977
5IMR|1|A|A|978
5IMR|1|A|C|979
5IMR|1|A|C|980
5IMR|1|A|U|981
5IMR|1|A|U|982
5IMR|1|A|A|983
5IMR|1|A|C|984
5IMR|1|A|C|985
*
5IMR|1|A|G|1220
5IMR|1|A|G|1221
5IMR|1|A|G|1222
5IMR|1|A|C|1223
5IMR|1|A|G|1224
5IMR|1|A|A|1225
5IMR|1|A|C|1226
5IMR|1|A|A|1227
5IMR|1|A|C|1228
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain 4
- Transfer RNA; tRNA
- Chain N
- 30S ribosomal protein S10
- Chain Q
- 30S ribosomal protein S13
- Chain R
- 30S ribosomal protein S14 type Z
- Chain W
- 30S ribosomal protein S19
Coloring options: