J3_5IMR_029

3D structure

PDB id

5IMR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosome bound to cofactor at 5.7 angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

GUGGAUGC*GUGAAAAGAACC*GGAGUGAAAUAGAGCCUGAAAC

Length

42 nucleotides

Bulged bases

5IMR|1|D|A|482, 5IMR|1|D|A|501, 5IMR|1|D|A|502, 5IMR|1|D|U|504, 5IMR|1|D|G|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5IMR|1|D|G|24
5IMR|1|D|U|25
5IMR|1|D|G|26
5IMR|1|D|G|27
5IMR|1|D|A|28
5IMR|1|D|U|29
5IMR|1|D|G|30
5IMR|1|D|C|31
*
5IMR|1|D|G|474
5IMR|1|D|U|475
5IMR|1|D|G|476
5IMR|1|D|A|477
5IMR|1|D|A|478
5IMR|1|D|A|479
5IMR|1|D|A|480
5IMR|1|D|G|481
5IMR|1|D|A|482
5IMR|1|D|A|483
5IMR|1|D|C|484
5IMR|1|D|C|485
*
5IMR|1|D|G|495
5IMR|1|D|G|496
5IMR|1|D|A|497
5IMR|1|D|G|498
5IMR|1|D|U|499
5IMR|1|D|G|500
5IMR|1|D|A|501
5IMR|1|D|A|502
5IMR|1|D|A|503
5IMR|1|D|U|504
5IMR|1|D|A|505
5IMR|1|D|G|506
5IMR|1|D|A|507
5IMR|1|D|G|508
5IMR|1|D|C|509
5IMR|1|D|C|510
5IMR|1|D|U|511
5IMR|1|D|G|512
5IMR|1|D|A|513
5IMR|1|D|A|514
5IMR|1|D|A|515
5IMR|1|D|C|516

Current chains

Chain D

23S ribosomal RNA

Nearby chains

Chain m

50S ribosomal protein L20

Chain o

50S ribosomal protein L22

Chain p

50S ribosomal protein L23

Chain q

50S ribosomal protein L24

Chain w

50S ribosomal protein L32