J3_5IMR_030

3D structure

PDB id

5IMR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosome bound to cofactor at 5.7 angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

CUCGGC*GACCGAUAGCGCACCAGUAC*GGAAAG

Length

32 nucleotides

Bulged bases

5IMR|1|D|C|34, 5IMR|1|D|A|443, 5IMR|1|D|U|448, 5IMR|1|D|C|455, 5IMR|1|D|C|456

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5IMR|1|D|C|32
5IMR|1|D|U|33
5IMR|1|D|C|34
5IMR|1|D|G|35
5IMR|1|D|G|36
5IMR|1|D|C|37
*
5IMR|1|D|G|442
5IMR|1|D|A|443
5IMR|1|D|C|444
5IMR|1|D|C|445
5IMR|1|D|G|446
5IMR|1|D|A|447
5IMR|1|D|U|448
5IMR|1|D|A|449
5IMR|1|D|G|450
5IMR|1|D|C|451
5IMR|1|D|G|452
5IMR|1|D|C|453
5IMR|1|D|A|454
5IMR|1|D|C|455
5IMR|1|D|C|456
5IMR|1|D|A|457
5IMR|1|D|G|458
5IMR|1|D|U|459
5IMR|1|D|A|460
5IMR|1|D|C|461
*
5IMR|1|D|G|468
5IMR|1|D|G|469
5IMR|1|D|A|470
5IMR|1|D|A|471
5IMR|1|D|A|472
5IMR|1|D|G|473

Current chains

Chain D

23S ribosomal RNA

Nearby chains

Chain c

50S ribosomal protein L4

Chain m

50S ribosomal protein L20

Chain p

50S ribosomal protein L23

Chain y

50S ribosomal protein L34