J3_5IMR_030
3D structure
- PDB id
- 5IMR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of ribosome bound to cofactor at 5.7 angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.7 Å
Loop
- Sequence
- CUCGGC*GACCGAUAGCGCACCAGUAC*GGAAAG
- Length
- 32 nucleotides
- Bulged bases
- 5IMR|1|D|C|34, 5IMR|1|D|A|443, 5IMR|1|D|U|448, 5IMR|1|D|C|455, 5IMR|1|D|C|456
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5IMR|1|D|C|32
5IMR|1|D|U|33
5IMR|1|D|C|34
5IMR|1|D|G|35
5IMR|1|D|G|36
5IMR|1|D|C|37
*
5IMR|1|D|G|442
5IMR|1|D|A|443
5IMR|1|D|C|444
5IMR|1|D|C|445
5IMR|1|D|G|446
5IMR|1|D|A|447
5IMR|1|D|U|448
5IMR|1|D|A|449
5IMR|1|D|G|450
5IMR|1|D|C|451
5IMR|1|D|G|452
5IMR|1|D|C|453
5IMR|1|D|A|454
5IMR|1|D|C|455
5IMR|1|D|C|456
5IMR|1|D|A|457
5IMR|1|D|G|458
5IMR|1|D|U|459
5IMR|1|D|A|460
5IMR|1|D|C|461
*
5IMR|1|D|G|468
5IMR|1|D|G|469
5IMR|1|D|A|470
5IMR|1|D|A|471
5IMR|1|D|A|472
5IMR|1|D|G|473
Current chains
- Chain D
- 23S ribosomal RNA
Nearby chains
- Chain c
- 50S ribosomal protein L4
- Chain m
- 50S ribosomal protein L20
- Chain p
- 50S ribosomal protein L23
- Chain y
- 50S ribosomal protein L34
Coloring options: