J3_5IMR_031

3D structure

PDB id

5IMR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosome bound to cofactor at 5.7 angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

AC*GAUAAGCC*GGAUGU

Length

16 nucleotides

Bulged bases

5IMR|1|D|A|71, 5IMR|1|D|U|72, 5IMR|1|D|A|73, 5IMR|1|D|A|74, 5IMR|1|D|G|75, 5IMR|1|D|G|113

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5IMR|1|D|A|56
5IMR|1|D|C|57
*
5IMR|1|D|G|70
5IMR|1|D|A|71
5IMR|1|D|U|72
5IMR|1|D|A|73
5IMR|1|D|A|74
5IMR|1|D|G|75
5IMR|1|D|C|76
5IMR|1|D|C|77
*
5IMR|1|D|G|109
5IMR|1|D|G|110
5IMR|1|D|A|111
5IMR|1|D|U|112
5IMR|1|D|G|113
5IMR|1|D|U|114

Current chains

Chain D

23S ribosomal RNA

Nearby chains

Chain p

50S ribosomal protein L23

Chain t

50S ribosomal protein L29

Chain y

50S ribosomal protein L34