J3_5IMR_033

3D structure

PDB id

5IMR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosome bound to cofactor at 5.7 angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

GACUGUUUACCAAAAACACAGCU*AGCGAC*GUAAC

Length

34 nucleotides

Bulged bases

5IMR|1|D|A|1780, 5IMR|1|D|C|1781, 5IMR|1|D|C|1782, 5IMR|1|D|A|1783, 5IMR|1|D|A|1784, 5IMR|1|D|A|1791

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5IMR|1|D|G|1772
5IMR|1|D|A|1773
5IMR|1|D|C|1774
5IMR|1|D|U|1775
5IMR|1|D|G|1776
5IMR|1|D|U|1777
5IMR|1|D|U|1778
5IMR|1|D|U|1779
5IMR|1|D|A|1780
5IMR|1|D|C|1781
5IMR|1|D|C|1782
5IMR|1|D|A|1783
5IMR|1|D|A|1784
5IMR|1|D|A|1785
5IMR|1|D|A|1786
5IMR|1|D|A|1787
5IMR|1|D|C|1788
5IMR|1|D|A|1789
5IMR|1|D|C|1790
5IMR|1|D|A|1791
5IMR|1|D|G|1792
5IMR|1|D|C|1793
5IMR|1|D|U|1794
*
5IMR|1|D|A|1825
5IMR|1|D|G|1826
5IMR|1|D|C|1827
5IMR|1|D|G|1828
5IMR|1|D|A|1829
5IMR|1|D|C|1830
*
5IMR|1|D|G|1975
5IMR|1|D|U|1976
5IMR|1|D|A|1977
5IMR|1|D|A|1978
5IMR|1|D|C|1979

Current chains

Chain D

23S ribosomal RNA

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain a

50S ribosomal protein L2

Chain y

50S ribosomal protein L34