J3_5IMR_047
3D structure
- PDB id
- 5IMR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of ribosome bound to cofactor at 5.7 angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.7 Å
Loop
- Sequence
- GCC*GCCUAGUGAACC*GAUCAAC
- Length
- 22 nucleotides
- Bulged bases
- 5IMR|1|D|A|2388, 5IMR|1|D|U|2390, 5IMR|1|D|A|2422, 5IMR|1|D|A|2426
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5IMR_047 not in the Motif Atlas
- Homologous match to J3_7A0S_020
- Geometric discrepancy: 0.2532
- The information below is about J3_7A0S_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_04772.1
- Basepair signature
- cWW-F-tHH-cWW-tHW-tHW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 8
Unit IDs
5IMR|1|D|G|2282
5IMR|1|D|C|2283
5IMR|1|D|C|2284
*
5IMR|1|D|G|2384
5IMR|1|D|C|2385
5IMR|1|D|C|2386
5IMR|1|D|U|2387
5IMR|1|D|A|2388
5IMR|1|D|G|2389
5IMR|1|D|U|2390
5IMR|1|D|G|2391
5IMR|1|D|A|2392
5IMR|1|D|A|2393
5IMR|1|D|C|2394
5IMR|1|D|C|2395
*
5IMR|1|D|G|2421
5IMR|1|D|A|2422
5IMR|1|D|U|2423
5IMR|1|D|C|2424
5IMR|1|D|A|2425
5IMR|1|D|A|2426
5IMR|1|D|C|2427
Current chains
- Chain D
- 23S ribosomal RNA
Nearby chains
- Chain 5
- Transfer RNA; tRNA
- Chain h
- 50S ribosomal protein L15
- Chain s
- 50S ribosomal protein L27
- Chain v
- 50S ribosomal protein L31
- Chain x
- 50S ribosomal protein L33
- Chain z
- 50S ribosomal protein L35
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