J3_5IQR_003

3D structure

PDB id

5IQR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to the 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGA*UUUAAAG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5IQR_003 not in the Motif Atlas

Homologous match to J3_5J7L_040

Geometric discrepancy: 0.1017

The information below is about J3_5J7L_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28621.5

Basepair signature

cWW-tSS-cSS-tSH-cWW-cWW-tWW-F-F

Number of instances in this motif group

7

Unit IDs

5IQR|1|1|G|1055
5IQR|1|1|G|1056
5IQR|1|1|A|1057
*
5IQR|1|1|U|1081
5IQR|1|1|U|1082
5IQR|1|1|U|1083
5IQR|1|1|A|1084
5IQR|1|1|A|1085
5IQR|1|1|A|1086
5IQR|1|1|G|1087
*
5IQR|1|1|C|1102
5IQR|1|1|A|1103
5IQR|1|1|C|1104

Current chains

Chain 1

LSU rRNA

Nearby chains

Chain H

50S ribosomal protein L10

Chain I

50S ribosomal protein L11

Chain f

50S ribosomal protein L36