J3_5IT8_012

3D structure

PDB id

5IT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution structure of the Escherichia coli ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.12 Å

Loop

Sequence

GC*GGAAUAU*AGC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5IT8_012 not in the Motif Atlas

Homologous match to J3_5J7L_001

Geometric discrepancy: 0.0475

The information below is about J3_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_67856.4

Basepair signature

cWW-cWW-cSW-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

5IT8|1|BA|G|46
5IT8|1|BA|C|47
*
5IT8|1|BA|G|361
5IT8|1|BA|G|362
5IT8|1|BA|A|363
5IT8|1|BA|A|364
5IT8|1|BA|U|365
5IT8|1|BA|A|366
5IT8|1|BA|U|367
*
5IT8|1|BA|A|393
5IT8|1|BA|G|394
5IT8|1|BA|C|395

Current chains

Chain BA

16S rRNA

Nearby chains

Chain BL

30S ribosomal protein S12

Chain BP

30S ribosomal protein S16

Chain DH

50S ribosomal protein L9