J3_5IT8_013

3D structure

PDB id

5IT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution structure of the Escherichia coli ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.12 Å

Loop

Sequence

CGG*CUUG*CG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5IT8_013 not in the Motif Atlas

Homologous match to J3_5J7L_002

Geometric discrepancy: 0.0412

The information below is about J3_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_56052.5

Basepair signature

cWW-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

5IT8|1|BA|C|586
5IT8|1|BA|G|587
5IT8|1|BA|G|588
*
5IT8|1|BA|C|651
5IT8|1|BA|U|652
5IT8|1|BA|U|653
5IT8|1|BA|G|654
*
5IT8|1|BA|C|754
5IT8|1|BA|G|755

Current chains

Chain BA

16S rRNA

Nearby chains

Chain BH

30S ribosomal protein S8

Chain BL

30S ribosomal protein S12

Chain BO

30S ribosomal protein S15

Chain BQ

30S ribosomal protein S17