J3_5IT8_035

3D structure

PDB id

5IT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution structure of the Escherichia coli ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.12 Å

Loop

Sequence

GGAAC*GUUGAU*AAUGAACC

Length

19 nucleotides

Bulged bases

5IT8|1|CA|U|2833, 5IT8|1|CA|A|2835, 5IT8|1|CA|U|2884, 5IT8|1|CA|G|2885

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5IT8|1|CA|G|2811
5IT8|1|CA|G|2812
5IT8|1|CA|A|2813
5IT8|1|CA|A|2814
5IT8|1|CA|C|2815
*
5IT8|1|CA|G|2831
5IT8|1|CA|U|2832
5IT8|1|CA|U|2833
5IT8|1|CA|G|2834
5IT8|1|CA|A|2835
5IT8|1|CA|U|2836
*
5IT8|1|CA|A|2882
5IT8|1|CA|A|2883
5IT8|1|CA|U|2884
5IT8|1|CA|G|2885
5IT8|1|CA|A|2886
5IT8|1|CA|A|2887
5IT8|1|CA|C|2888
5IT8|1|CA|C|2889

Current chains

Chain CA

23S rRNA

Nearby chains

Chain C1

50S ribosomal protein L32

Chain CD

50S ribosomal protein L3

Chain CO

50S ribosomal protein L17

Chain CT

50S ribosomal protein L22