3D structure

PDB id
5IT8 (explore in PDB, NAKB, or RNA 3D Hub)
Description
High-resolution structure of the Escherichia coli ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.12 Å

Loop

Sequence
CAUC*GUA*UUUAAAG
Length
14 nucleotides
Bulged bases
5IT8|1|DA|A|2518, 5IT8|1|DA|U|2519
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_5IT8_047 not in the Motif Atlas
Homologous match to J3_5J7L_046
Geometric discrepancy: 0.0488
The information below is about J3_5J7L_046
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_32601.5
Basepair signature
cWW-tWH-cHW-F-cWW-tSS-F-cWW
Number of instances in this motif group
4

Unit IDs

5IT8|1|DA|C|2517
5IT8|1|DA|A|2518
5IT8|1|DA|U|2519
5IT8|1|DA|C|2520
*
5IT8|1|DA|G|2545
5IT8|1|DA|U|2546
5IT8|1|DA|A|2547
*
5IT8|1|DA|U|2561
5IT8|1|DA|U|2562
5IT8|1|DA|U|2563
5IT8|1|DA|A|2564
5IT8|1|DA|A|2565
5IT8|1|DA|A|2566
5IT8|1|DA|G|2567

Current chains

Chain DA
23S rRNA

Nearby chains

Chain DD
50S ribosomal protein L3
Chain DL
50S ribosomal protein L14

Coloring options:


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