J3_5IT8_059

3D structure

PDB id

5IT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution structure of the Escherichia coli ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.12 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

5IT8|1|BA|U|1212, 5IT8|1|BA|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5IT8_059 not in the Motif Atlas

Homologous match to J3_5J7L_053

Geometric discrepancy: 0.0322

The information below is about J3_5J7L_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.2

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

2

Unit IDs

5IT8|1|BA|C|990
5IT8|1|BA|U|991
5IT8|1|BA|U|992
5IT8|1|BA|G|993
5IT8|1|BA|A|994
5IT8|1|BA|C|995
5IT8|1|BA|A|996
5IT8|1|BA|U|997
*
5IT8|1|BA|A|1044
5IT8|1|BA|C|1045
5IT8|1|BA|A|1046
5IT8|1|BA|G|1047
*
5IT8|1|BA|C|1210
5IT8|1|BA|U|1211
5IT8|1|BA|U|1212
5IT8|1|BA|A|1213
5IT8|1|BA|C|1214
5IT8|1|BA|G|1215

Current chains

Chain BA

16S rRNA

Nearby chains

Chain BN

30S ribosomal protein S14