J3_5IT9_001

3D structure

PDB id

5IT9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Kluyveromyces lactis small ribosomal subunit in complex with the cricket paralysis virus IRES.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AG*CGCAAAU*AGU

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5IT9_001 not in the Motif Atlas

Geometric match to J3_8C3A_082

Geometric discrepancy: 0.0971

The information below is about J3_8C3A_082

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_67856.2

Basepair signature

cWW-F-cWW-F-F-cSW-F-cWW

Number of instances in this motif group

5

Unit IDs

5IT9|1|2|A|41
5IT9|1|2|G|42
*
5IT9|1|2|C|432
5IT9|1|2|G|433
5IT9|1|2|C|434
5IT9|1|2|A|435
5IT9|1|2|A|436
5IT9|1|2|A|437
5IT9|1|2|U|438
*
5IT9|1|2|A|463
5IT9|1|2|G|464
5IT9|1|2|U|465

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain J

Ribosomal protein uS4

Chain X

Ribosomal protein uS21