J3_5IT9_005
3D structure
- PDB id
- 5IT9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast Kluyveromyces lactis small ribosomal subunit in complex with the cricket paralysis virus IRES.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CUA*UUACG*CAAAG
- Length
- 13 nucleotides
- Bulged bases
- 5IT9|1|2|A|1092
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5IT9_005 not in the Motif Atlas
- Homologous match to J3_4V88_034
- Geometric discrepancy: 0.3912
- The information below is about J3_4V88_034
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_23622.1
- Basepair signature
- cWW-tWW-tWW-F-cWW-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
5IT9|1|2|C|1036
5IT9|1|2|U|1037
5IT9|1|2|A|1038
*
5IT9|1|2|U|1078
5IT9|1|2|U|1079
5IT9|1|2|A|1080
5IT9|1|2|C|1081
5IT9|1|2|G|1082
*
5IT9|1|2|C|1089
5IT9|1|2|A|1090
5IT9|1|2|A|1091
5IT9|1|2|A|1092
5IT9|1|2|G|1093
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain A
- Ribosomal protein uS2
- Chain C
- Ribosomal protein uS5
- Chain V
- Ribosomal protein eS21
- Chain W
- Ribosomal protein uS8
- Chain X
- Ribosomal protein uS21
- Chain a
- Ribosomal protein eS26
- Chain b
- Ribosomal protein eS27
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