J3_5IT9_007
3D structure
- PDB id
- 5IT9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast Kluyveromyces lactis small ribosomal subunit in complex with the cricket paralysis virus IRES.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- UGGA*UAC*GGAA
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5IT9_007 not in the Motif Atlas
- Homologous match to J3_4V88_036
- Geometric discrepancy: 0.1396
- The information below is about J3_4V88_036
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_52655.2
- Basepair signature
- cWW-tSH-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
5IT9|1|2|U|1167
5IT9|1|2|G|1168
5IT9|1|2|G|1169
5IT9|1|2|A|1170
*
5IT9|1|2|U|1466
5IT9|1|2|A|1467
5IT9|1|2|C|1468
*
5IT9|1|2|G|1572
5IT9|1|2|G|1573
5IT9|1|2|A|1574
5IT9|1|2|A|1575
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain F
- Ribosomal protein uS7
- Chain Q
- Ribosomal protein uS9
- Chain S
- Ribosomal protein uS13
- Chain T
- Ribosomal protein eS19
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