J3_5IT9_010
3D structure
- PDB id
- 5IT9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast Kluyveromyces lactis small ribosomal subunit in complex with the cricket paralysis virus IRES.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- UCUUAG*CGAGAC*GCAAUA
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5IT9_010 not in the Motif Atlas
- Homologous match to J3_4V88_039
- Geometric discrepancy: 0.1184
- The information below is about J3_4V88_039
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_47248.1
- Basepair signature
- cWW-F-F-F-F-F-tHH-F-cWW-cWW-F-F-F
- Number of instances in this motif group
- 1
Unit IDs
5IT9|1|2|U|1282
5IT9|1|2|C|1283
5IT9|1|2|U|1284
5IT9|1|2|U|1285
5IT9|1|2|A|1286
5IT9|1|2|G|1287
*
5IT9|1|2|C|1326
5IT9|1|2|G|1327
5IT9|1|2|A|1328
5IT9|1|2|G|1329
5IT9|1|2|A|1330
5IT9|1|2|C|1331
*
5IT9|1|2|G|1417
5IT9|1|2|C|1418
5IT9|1|2|A|1419
5IT9|1|2|A|1420
5IT9|1|2|U|1421
5IT9|1|2|A|1422
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain C
- Ribosomal protein uS5
- Chain D
- Ribosomal protein uS3
- Chain Q
- Ribosomal protein uS9
- Chain R
- Ribosomal protein eS17
- Chain U
- Ribosomal protein uS10
- Chain d
- Ribosomal protein eS29
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