J3_5IT9_013
3D structure
- PDB id
- 5IT9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast Kluyveromyces lactis small ribosomal subunit in complex with the cricket paralysis virus IRES.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CACUG*CGUGCUGG*CGAG
- Length
- 17 nucleotides
- Bulged bases
- 5IT9|1|2|U|1471, 5IT9|1|2|U|1533, 5IT9|1|2|G|1537
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5IT9_013 not in the Motif Atlas
- Homologous match to J3_4V88_041
- Geometric discrepancy: 0.278
- The information below is about J3_4V88_041
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_37047.3
- Basepair signature
- cWW-cSS-cSH-F-tWH-F-cWW-cSH-F-F-F-cWW
- Number of instances in this motif group
- 5
Unit IDs
5IT9|1|2|C|1468
5IT9|1|2|A|1469
5IT9|1|2|C|1470
5IT9|1|2|U|1471
5IT9|1|2|G|1472
*
5IT9|1|2|C|1531
5IT9|1|2|G|1532
5IT9|1|2|U|1533
5IT9|1|2|G|1534
5IT9|1|2|C|1535
5IT9|1|2|U|1536
5IT9|1|2|G|1537
5IT9|1|2|G|1538
*
5IT9|1|2|C|1569
5IT9|1|2|G|1570
5IT9|1|2|A|1571
5IT9|1|2|G|1572
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain F
- Ribosomal protein uS7
- Chain S
- Ribosomal protein uS13
- Chain T
- Ribosomal protein eS19
- Chain Z
- Ribosomal protein eS25
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