3D structure

PDB id
5IWA (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the 30S ribosomal subunit from Thermus thermophilus in complex with the GE81112 peptide antibiotic
Experimental method
X-RAY DIFFRACTION
Resolution
3.5 Å

Loop

Sequence
CUUG*CAG*CUUACG
Length
13 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_5IWA_005 not in the Motif Atlas
Homologous match to J3_4LFB_005
Geometric discrepancy: 0.1374
The information below is about J3_4LFB_005
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_82572.1
Basepair signature
cWW-tSH-tWW-F-cWW-tHW-F-F-cWW
Number of instances in this motif group
2

Unit IDs

5IWA|1|A|C|990
5IWA|1|A|U|991
5IWA|1|A|U|992
5IWA|1|A|G|993
*
5IWA|1|A|C|1045
5IWA|1|A|A|1046
5IWA|1|A|G|1047
*
5IWA|1|A|C|1210
5IWA|1|A|U|1211
5IWA|1|A|U|1212
5IWA|1|A|A|1213
5IWA|1|A|C|1214
5IWA|1|A|G|1215

Current chains

Chain A
16S ribosomal RNA

Nearby chains

Chain N
30S ribosomal protein S14 type Z

Coloring options:


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