J3_5IWA_011
3D structure
- PDB id
- 5IWA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the 30S ribosomal subunit from Thermus thermophilus in complex with the GE81112 peptide antibiotic
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.5 Å
Loop
- Sequence
- GCCUAAG*UAGGAAUCU*AGC
- Length
- 19 nucleotides
- Bulged bases
- 5IWA|1|A|C|48, 5IWA|1|A|A|50, 5IWA|1|A|A|51
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5IWA_011 not in the Motif Atlas
- Homologous match to J3_4LFB_014
- Geometric discrepancy: 0.0726
- The information below is about J3_4LFB_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_46317.4
- Basepair signature
- cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
5IWA|1|A|G|46
5IWA|1|A|C|47
5IWA|1|A|C|48
5IWA|1|A|U|49
5IWA|1|A|A|50
5IWA|1|A|A|51
5IWA|1|A|G|52
*
5IWA|1|A|U|359
5IWA|1|A|A|360
5IWA|1|A|G|361
5IWA|1|A|G|362
5IWA|1|A|A|363
5IWA|1|A|A|364
5IWA|1|A|U|365
5IWA|1|A|C|366
5IWA|1|A|U|367
*
5IWA|1|A|A|393
5IWA|1|A|G|394
5IWA|1|A|C|395
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain L
- 30S ribosomal protein S12
- Chain P
- 30S ribosomal protein S16
Coloring options: