J3_5J30_005

3D structure

PDB id

5J30 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus 70S termination complex containing E. coli RF1

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5J30_005 not in the Motif Atlas

Homologous match to J3_4LFB_002

Geometric discrepancy: 0.0507

The information below is about J3_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85722.1

Basepair signature

cWW-F-F-cSS-F-cWW-tHH-tWW-F-tWH-tHS-cSH-cWW

Number of instances in this motif group

5

Unit IDs

5J30|1|QA|C|936
5J30|1|QA|A|937
5J30|1|QA|A|938
5J30|1|QA|G|939
*
5J30|1|QA|C|1344
5J30|1|QA|U|1345
5J30|1|QA|A|1346
5J30|1|QA|G|1347
5J30|1|QA|U|1348
5J30|1|QA|A|1349
5J30|1|QA|A|1350
*
5J30|1|QA|U|1372
5J30|1|QA|G|1373
5J30|1|QA|A|1374
5J30|1|QA|A|1375
5J30|1|QA|U|1376
5J30|1|QA|A|1377
5J30|1|QA|C|1378
5J30|1|QA|G|1379

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QG

30S ribosomal protein S7

Chain QI

30S ribosomal protein S9