J3_5J30_014
3D structure
- PDB id
- 5J30 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Thermus thermophilus 70S termination complex containing E. coli RF1
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- GC*GUGAAAAG*CC
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5J30_014 not in the Motif Atlas
- Homologous match to J3_7RQB_001
- Geometric discrepancy: 0.0428
- The information below is about J3_7RQB_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_65070.3
- Basepair signature
- cWW-tWH-cWW-tSH-F-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
5J30|1|RA|G|30
5J30|1|RA|C|31
*
5J30|1|RA|G|474
5J30|1|RA|U|475
5J30|1|RA|G|476
5J30|1|RA|A|477
5J30|1|RA|A|478
5J30|1|RA|A|479
5J30|1|RA|A|480
5J30|1|RA|G|481
*
5J30|1|RA|C|509
5J30|1|RA|C|510
Current chains
- Chain RA
- 23S rRNA
Nearby chains
- Chain RU
- 50S ribosomal protein L20
- Chain RW
- 50S ribosomal protein L22
- Chain RY
- 50S ribosomal protein L24
Coloring options: