J3_5J30_037

3D structure

PDB id

5J30 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus 70S termination complex containing E. coli RF1

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CUUG*CAG*CUUACG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5J30_037 not in the Motif Atlas

Homologous match to J3_4LFB_005

Geometric discrepancy: 0.169

The information below is about J3_4LFB_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_82572.1

Basepair signature

cWW-tSH-tWW-F-cWW-tHW-F-F-cWW

Number of instances in this motif group

2

Unit IDs

5J30|1|XA|C|990
5J30|1|XA|U|991
5J30|1|XA|U|992
5J30|1|XA|G|993
*
5J30|1|XA|C|1045
5J30|1|XA|A|1046
5J30|1|XA|G|1047
*
5J30|1|XA|C|1210
5J30|1|XA|U|1211
5J30|1|XA|U|1212
5J30|1|XA|A|1213
5J30|1|XA|C|1214
5J30|1|XA|G|1215

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XN

30S ribosomal protein S14 type Z

Chain XY

Peptide chain release factor 1