J3_5J30_045
3D structure
- PDB id
- 5J30 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Thermus thermophilus 70S termination complex containing E. coli RF1
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- CGAGCUA*UAG*CGAG
- Length
- 14 nucleotides
- Bulged bases
- 5J30|1|YA|G|686, 5J30|1|YA|G|792
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5J30_045 not in the Motif Atlas
- Homologous match to J3_7RQB_004
- Geometric discrepancy: 0.03
- The information below is about J3_7RQB_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_39238.4
- Basepair signature
- cWW-tWH-cWW-tSW-F-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
5J30|1|YA|C|683
5J30|1|YA|G|684
5J30|1|YA|A|685
5J30|1|YA|G|686
5J30|1|YA|C|687
5J30|1|YA|U|688
5J30|1|YA|A|689
*
5J30|1|YA|U|773
5J30|1|YA|A|774
5J30|1|YA|G|775
*
5J30|1|YA|C|791
5J30|1|YA|G|792
5J30|1|YA|A|793
5J30|1|YA|G|794
Current chains
- Chain YA
- 23S rRNA
Nearby chains
- Chain Y7
- 50S ribosomal protein L34
- Chain YD
- 50S ribosomal protein L2
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