J3_5J3C_023

3D structure

PDB id

5J3C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus 70S termination complex containing E. coli RF1

Experimental method

X-RAY DIFFRACTION

Resolution

3.04 Å

Loop

Sequence

UUG*CUAAC*GGACAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5J3C_023 not in the Motif Atlas

Homologous match to J3_7RQB_010

Geometric discrepancy: 0.0436

The information below is about J3_7RQB_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_89368.3

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

5J3C|1|RA|U|2091
5J3C|1|RA|U|2092
5J3C|1|RA|G|2093
*
5J3C|1|RA|C|2196
5J3C|1|RA|U|2197
5J3C|1|RA|A|2198
5J3C|1|RA|A|2199
5J3C|1|RA|C|2200
*
5J3C|1|RA|G|2223
5J3C|1|RA|G|2224
5J3C|1|RA|A|2225
5J3C|1|RA|C|2226
5J3C|1|RA|A|2227
5J3C|1|RA|G|2228

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R1

50S ribosomal protein L28

Chain RD

50S ribosomal protein L2

Chain RI

50S ribosomal protein L9