J3_5J3C_062

3D structure

PDB id

5J3C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus 70S termination complex containing E. coli RF1

Experimental method

X-RAY DIFFRACTION

Resolution

3.04 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5J3C_062 not in the Motif Atlas

Homologous match to J3_9DFE_013

Geometric discrepancy: 0.0589

The information below is about J3_9DFE_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.2

Basepair signature

cWW-F-cWW-F-tHH-F-tHS-tHS-cWW

Number of instances in this motif group

4

Unit IDs

5J3C|1|RA|G|1424
5J3C|1|RA|G|1425
5J3C|1|RA|G|1426
5J3C|1|RA|A|1427
5J3C|1|RA|C|1428
5J3C|1|RA|G|1429
*
5J3C|1|RA|C|1564
5J3C|1|RA|C|1565
*
5J3C|1|RA|G|1568
5J3C|1|RA|A|1569
5J3C|1|RA|A|1570
5J3C|1|RA|A|1571
5J3C|1|RA|A|1572
5J3C|1|RA|G|1573
5J3C|1|RA|C|1574

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RD

50S ribosomal protein L2