J3_5J4B_020

3D structure

PDB id

5J4B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (co-crystallized) and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CGAGCUA*UAG*CGAG

Length

14 nucleotides

Bulged bases

5J4B|1|2A|G|686, 5J4B|1|2A|G|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5J4B_020 not in the Motif Atlas

Homologous match to J3_7RQB_004

Geometric discrepancy: 0.0382

The information below is about J3_7RQB_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_39238.4

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

5J4B|1|2A|C|683
5J4B|1|2A|G|684
5J4B|1|2A|A|685
5J4B|1|2A|G|686
5J4B|1|2A|C|687
5J4B|1|2A|U|688
5J4B|1|2A|A|689
*
5J4B|1|2A|U|773
5J4B|1|2A|A|774
5J4B|1|2A|G|775
*
5J4B|1|2A|C|791
5J4B|1|2A|G|792
5J4B|1|2A|A|793
5J4B|1|2A|G|794

Current chains

Chain 2A

23S ribosomal RNA

Nearby chains

Chain 27

50S ribosomal protein L34

Chain 2D

50S ribosomal protein L2