J3_5J4B_028

3D structure

PDB id

5J4B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (co-crystallized) and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5J4B_028 not in the Motif Atlas

Homologous match to J3_4LFB_002

Geometric discrepancy: 0.0794

The information below is about J3_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.4

Basepair signature

cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW

Number of instances in this motif group

4

Unit IDs

5J4B|1|2a|C|936
5J4B|1|2a|A|937
5J4B|1|2a|A|938
5J4B|1|2a|G|939
*
5J4B|1|2a|C|1344
5J4B|1|2a|U|1345
5J4B|1|2a|A|1346
5J4B|1|2a|G|1347
5J4B|1|2a|U|1348
5J4B|1|2a|A|1349
5J4B|1|2a|A|1350
*
5J4B|1|2a|U|1372
5J4B|1|2a|G|1373
5J4B|1|2a|A|1374
5J4B|1|2a|A|1375
5J4B|1|2a|U|1376
5J4B|1|2a|A|1377
5J4B|1|2a|C|1378
5J4B|1|2a|G|1379

Current chains

Chain 2a

16S ribosomal RNA

Nearby chains

Chain 2g

30S ribosomal protein S7

Chain 2i

30S ribosomal protein S9

Chain 2y

Transfer RNA; tRNA