J3_5J4B_030

3D structure

PDB id

5J4B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (co-crystallized) and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

UUUAAUUC*GAAGAACCUUACC*GGGCGA

Length

27 nucleotides

Bulged bases

5J4B|1|2a|A|975, 5J4B|1|2a|G|976

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5J4B_030 not in the Motif Atlas

Homologous match to J3_6CZR_062

Geometric discrepancy: 0.1251

The information below is about J3_6CZR_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_59791.1

Basepair signature

cWW-F-F-F-F-F-tSS-F-F-F-F-F-F-F-F-F-F-cWW-F-F-F

Number of instances in this motif group

1

Unit IDs

5J4B|1|2a|U|955
5J4B|1|2a|U|956
5J4B|1|2a|U|957
5J4B|1|2a|A|958
5J4B|1|2a|A|959
5J4B|1|2a|U|960
5J4B|1|2a|U|961
5J4B|1|2a|C|962
*
5J4B|1|2a|G|973
5J4B|1|2a|A|974
5J4B|1|2a|A|975
5J4B|1|2a|G|976
5J4B|1|2a|A|977
5J4B|1|2a|A|978
5J4B|1|2a|C|979
5J4B|1|2a|C|980
5J4B|1|2a|U|981
5J4B|1|2a|U|982
5J4B|1|2a|A|983
5J4B|1|2a|C|984
5J4B|1|2a|C|985
*
5J4B|1|2a|G|1220
5J4B|1|2a|G|1221
5J4B|1|2a|G|1222
5J4B|1|2a|C|1223
5J4B|1|2a|G|1224
5J4B|1|2a|A|1225

Current chains

Chain 2a

16S ribosomal RNA

Nearby chains

Chain 2j

30S ribosomal protein S10

Chain 2m

30S ribosomal protein S13

Chain 2n

30S ribosomal protein S14 type Z

Chain 2s

30S ribosomal protein S19

Chain 2w

Transfer RNA; tRNA