J3_5J4B_040

3D structure

PDB id

5J4B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (co-crystallized) and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CGAAG*CGCCAGAGAG*CGUAG

Length

20 nucleotides

Bulged bases

5J4B|1|1A|G|345

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5J4B_040 not in the Motif Atlas

Homologous match to J3_9DFE_006

Geometric discrepancy: 0.0583

The information below is about J3_9DFE_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

5J4B|1|1A|C|321
5J4B|1|1A|G|322
5J4B|1|1A|A|323
5J4B|1|1A|A|324
5J4B|1|1A|G|325
*
5J4B|1|1A|C|340
5J4B|1|1A|G|341
5J4B|1|1A|C|342
5J4B|1|1A|C|343
5J4B|1|1A|A|344
5J4B|1|1A|G|345
5J4B|1|1A|A|346
5J4B|1|1A|G|347
5J4B|1|1A|A|348
5J4B|1|1A|G|349
*
5J4B|1|1A|C|361
5J4B|1|1A|G|362
5J4B|1|1A|U|363
5J4B|1|1A|A|364
5J4B|1|1A|G|365

Current chains

Chain 1A

23S ribosomal RNA

Nearby chains

Chain 1F

50S ribosomal protein L4

Chain 1Y

50S ribosomal protein L24