J3_5J4B_042
3D structure
- PDB id
- 5J4B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (co-crystallized) and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- GGGACG*CC*GAAAAGC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5J4B_042 not in the Motif Atlas
- Homologous match to J3_9DFE_013
- Geometric discrepancy: 0.0752
- The information below is about J3_9DFE_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_34864.2
- Basepair signature
- cWW-F-cWW-F-tHH-F-tHS-tHS-cWW
- Number of instances in this motif group
- 4
Unit IDs
5J4B|1|1A|G|1470
5J4B|1|1A|G|1471
5J4B|1|1A|G|1472
5J4B|1|1A|A|1473
5J4B|1|1A|C|1474
5J4B|1|1A|G|1475
*
5J4B|1|1A|C|1611
5J4B|1|1A|C|1612
*
5J4B|1|1A|G|1615
5J4B|1|1A|A|1616
5J4B|1|1A|A|1617
5J4B|1|1A|A|1618
5J4B|1|1A|A|1619
5J4B|1|1A|G|1620
5J4B|1|1A|C|1621
Current chains
- Chain 1A
- 23S ribosomal RNA
Nearby chains
- Chain 1D
- 50S ribosomal protein L2
Coloring options: