J3_5J4B_060

3D structure

PDB id

5J4B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (co-crystallized) and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GCGGGAC*GGCAG*CC

Length

14 nucleotides

Bulged bases

5J4B|1|2A|A|1384

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5J4B_060 not in the Motif Atlas

Homologous match to J3_9DFE_012

Geometric discrepancy: 0.0878

The information below is about J3_9DFE_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_31965.2

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW-F

Number of instances in this motif group

6

Unit IDs

5J4B|1|2A|G|1344
5J4B|1|2A|C|1345
5J4B|1|2A|G|1346
5J4B|1|2A|G|1347
5J4B|1|2A|G|1348
5J4B|1|2A|A|1349
5J4B|1|2A|C|1350
*
5J4B|1|2A|G|1381
5J4B|1|2A|G|1382
5J4B|1|2A|C|1383
5J4B|1|2A|A|1384
5J4B|1|2A|G|1385
*
5J4B|1|2A|C|1402
5J4B|1|2A|C|1403

Current chains

Chain 2A

23S ribosomal RNA

Nearby chains

Chain 2X

50S ribosomal protein L23