J3_5J4B_070
3D structure
- PDB id
- 5J4B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (co-crystallized) and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- UG*CGCCGAUGG*CAG
- Length
- 14 nucleotides
- Bulged bases
- 5J4B|1|2a|U|723
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5J4B_070 not in the Motif Atlas
- Homologous match to J3_6CZR_017
- Geometric discrepancy: 0.1104
- The information below is about J3_6CZR_017
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_11934.3
- Basepair signature
- cWW-F-cWW-F-F-tWW-F-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
5J4B|1|2a|U|672
5J4B|1|2a|G|673
*
5J4B|1|2a|C|717
5J4B|1|2a|G|718
5J4B|1|2a|C|719
5J4B|1|2a|C|720
5J4B|1|2a|G|721
5J4B|1|2a|A|722
5J4B|1|2a|U|723
5J4B|1|2a|G|724
5J4B|1|2a|G|725
*
5J4B|1|2a|C|732
5J4B|1|2a|A|733
5J4B|1|2a|G|734
Current chains
- Chain 2a
- 16S ribosomal RNA
Nearby chains
- Chain 2D
- 50S ribosomal protein L2
- Chain 2f
- 30S ribosomal protein S6
- Chain 2k
- 30S ribosomal protein S11
- Chain 2o
- 30S ribosomal protein S15
- Chain 2r
- 30S ribosomal protein S18
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