J3_5J4C_034

3D structure

PDB id

5J4C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (soaked) and bound to mRNA and A-, P- and E-site tRNAs at 2.8A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GC*GUGAAAAG*CC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5J4C_034 not in the Motif Atlas

Geometric match to J3_8VTW_036

Geometric discrepancy: 0.0372

The information below is about J3_8VTW_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_69021.1

Basepair signature

cWW-tWH-cWW-tSH-F-cWW-F

Number of instances in this motif group

7

Unit IDs

5J4C|1|1A|G|30
5J4C|1|1A|C|31
*
5J4C|1|1A|G|500
5J4C|1|1A|U|501
5J4C|1|1A|G|502
5J4C|1|1A|A|503
5J4C|1|1A|A|504
5J4C|1|1A|A|505
5J4C|1|1A|A|506
5J4C|1|1A|G|507
*
5J4C|1|1A|C|534
5J4C|1|1A|C|535

Current chains

Chain 1A

23S ribosomal RNA

Nearby chains

Chain 1U

50S ribosomal protein L20

Chain 1W

50S ribosomal protein L22

Chain 1Y

50S ribosomal protein L24