J3_5J4D_024
3D structure
- PDB id
- 5J4D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- CAUC*GUU*AUUAAAG
- Length
- 14 nucleotides
- Bulged bases
- 5J4D|1|B|A|2518, 5J4D|1|B|U|2519
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5J4D_024 not in the Motif Atlas
- Homologous match to J3_9DFE_017
- Geometric discrepancy: 0.0637
- The information below is about J3_9DFE_017
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_32601.6
- Basepair signature
- cWW-cWH-cWW-tWH-tSS-F-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
5J4D|1|B|C|2517
5J4D|1|B|A|2518
5J4D|1|B|U|2519
5J4D|1|B|C|2520
*
5J4D|1|B|G|2545
5J4D|1|B|U|2546
5J4D|1|B|U|2547
*
5J4D|1|B|A|2561
5J4D|1|B|U|2562
5J4D|1|B|U|2563
5J4D|1|B|A|2564
5J4D|1|B|A|2565
5J4D|1|B|A|2566
5J4D|1|B|G|2567
Current chains
- Chain B
- 25S ribosomal RNA
Nearby chains
- Chain F
- 50S ribosomal protein L3
- Chain K
- 50S ribosomal protein L13
- Chain L
- 50S ribosomal protein L14
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