J3_5J4D_032

3D structure

PDB id

5J4D (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5J4D_032 not in the Motif Atlas

Homologous match to J3_4LFB_002

Geometric discrepancy: 0.0784

The information below is about J3_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85722.1

Basepair signature

cWW-F-F-cSS-F-cWW-tHH-tWW-F-tWH-tHS-cSH-cWW

Number of instances in this motif group

5

Unit IDs

5J4D|1|FB|C|936
5J4D|1|FB|A|937
5J4D|1|FB|A|938
5J4D|1|FB|G|939
*
5J4D|1|FB|C|1344
5J4D|1|FB|U|1345
5J4D|1|FB|A|1346
5J4D|1|FB|G|1347
5J4D|1|FB|U|1348
5J4D|1|FB|A|1349
5J4D|1|FB|A|1350
*
5J4D|1|FB|U|1372
5J4D|1|FB|G|1373
5J4D|1|FB|A|1374
5J4D|1|FB|A|1375
5J4D|1|FB|U|1376
5J4D|1|FB|A|1377
5J4D|1|FB|C|1378
5J4D|1|FB|G|1379

Current chains

Chain FB

16S ribosomal RNA

Nearby chains

Chain IB

Transfer RNA; tRNA

Chain UC

30S ribosomal protein S7

Chain WC

30S ribosomal protein S9