J3_5J4D_040

3D structure

PDB id

5J4D (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CAAUG*CCCAGUUC*GCCG

Length

17 nucleotides

Bulged bases

5J4D|1|FB|U|1240, 5J4D|1|FB|U|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5J4D_040 not in the Motif Atlas

Homologous match to J3_4LFB_009

Geometric discrepancy: 0.1052

The information below is about J3_4LFB_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_03192.1

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-cSH-cSH-F

Number of instances in this motif group

5

Unit IDs

5J4D|1|FB|C|1237
5J4D|1|FB|A|1238
5J4D|1|FB|A|1239
5J4D|1|FB|U|1240
5J4D|1|FB|G|1241
*
5J4D|1|FB|C|1296
5J4D|1|FB|C|1297
5J4D|1|FB|C|1298
5J4D|1|FB|A|1299
5J4D|1|FB|G|1300
5J4D|1|FB|U|1301
5J4D|1|FB|U|1302
5J4D|1|FB|C|1303
*
5J4D|1|FB|G|1334
5J4D|1|FB|C|1335
5J4D|1|FB|C|1336
5J4D|1|FB|G|1337

Current chains

Chain FB

16S ribosomal RNA

Nearby chains

Chain AD

30S ribosomal protein S13

Chain ID

30S ribosomal protein Thx

Chain UC

30S ribosomal protein S7