J3_5J4D_041

3D structure

PDB id

5J4D (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GC*GUGAAAAG*CC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5J4D_041 not in the Motif Atlas

Geometric match to J3_8VTW_036

Geometric discrepancy: 0.0679

The information below is about J3_8VTW_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_69021.1

Basepair signature

cWW-tWH-cWW-tSH-F-cWW-F

Number of instances in this motif group

7

Unit IDs

5J4D|1|GB|G|30
5J4D|1|GB|C|31
*
5J4D|1|GB|G|474
5J4D|1|GB|U|475
5J4D|1|GB|G|476
5J4D|1|GB|A|477
5J4D|1|GB|A|478
5J4D|1|GB|A|479
5J4D|1|GB|A|480
5J4D|1|GB|G|481
*
5J4D|1|GB|C|509
5J4D|1|GB|C|510

Current chains

Chain GB

25S ribosomal RNA

Nearby chains

Chain AC

50S ribosomal protein L24

Chain WB

50S ribosomal protein L20

Chain YB

50S ribosomal protein L22