J3_5J4D_042
3D structure
- PDB id
- 5J4D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- AC*GAUAAGC*GAUGU
- Length
- 14 nucleotides
- Bulged bases
- 5J4D|1|GB|A|74
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5J4D_042 not in the Motif Atlas
- Homologous match to J3_9DFE_004
- Geometric discrepancy: 0.0672
- The information below is about J3_9DFE_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_01004.1
- Basepair signature
- cWW-cWW-F-F-F-cWW-F-cWW
- Number of instances in this motif group
- 10
Unit IDs
5J4D|1|GB|A|56
5J4D|1|GB|C|57
*
5J4D|1|GB|G|70
5J4D|1|GB|A|71
5J4D|1|GB|U|72
5J4D|1|GB|A|73
5J4D|1|GB|A|74
5J4D|1|GB|G|75
5J4D|1|GB|C|76
*
5J4D|1|GB|G|110
5J4D|1|GB|A|111
5J4D|1|GB|U|112
5J4D|1|GB|G|113
5J4D|1|GB|U|114
Current chains
- Chain GB
- 25S ribosomal RNA
Nearby chains
- Chain EC
- 50S ribosomal protein L29
- Chain JC
- 50S ribosomal protein L34
- Chain ZB
- 50S ribosomal protein L23
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