J3_5J4D_044

3D structure

PDB id

5J4D (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGAGCUA*UAG*CGAG

Length

14 nucleotides

Bulged bases

5J4D|1|GB|G|686, 5J4D|1|GB|G|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5J4D_044 not in the Motif Atlas

Homologous match to J3_9DFE_007

Geometric discrepancy: 0.0572

The information below is about J3_9DFE_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46658.1

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

10

Unit IDs

5J4D|1|GB|C|683
5J4D|1|GB|G|684
5J4D|1|GB|A|685
5J4D|1|GB|G|686
5J4D|1|GB|C|687
5J4D|1|GB|U|688
5J4D|1|GB|A|689
*
5J4D|1|GB|U|773
5J4D|1|GB|A|774
5J4D|1|GB|G|775
*
5J4D|1|GB|C|791
5J4D|1|GB|G|792
5J4D|1|GB|A|793
5J4D|1|GB|G|794

Current chains

Chain GB

25S ribosomal RNA

Nearby chains

Chain JB

50S ribosomal protein L2

Chain JC

50S ribosomal protein L34