J3_9DFE_007
3D structure
- PDB id
- 9DFE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with lasso peptide lariocidin and protein Y at 2.60A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- CGAGCUA*UAG*CGAG
- Length
- 14 nucleotides
- Bulged bases
- 9DFE|1|1A|G|686, 9DFE|1|1A|G|792, 9DFE|1|1A|A|793
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_46658.1
- Basepair signature
- cWW-tWH-cWW-tSW-F-F-cWW
- Number of instances in this motif group
- 10
Unit IDs
9DFE|1|1A|C|683
9DFE|1|1A|G|684
9DFE|1|1A|A|685
9DFE|1|1A|G|686
9DFE|1|1A|C|687
9DFE|1|1A|U|688
9DFE|1|1A|A|689
*
9DFE|1|1A|U|773
9DFE|1|1A|A|774
9DFE|1|1A|G|775
*
9DFE|1|1A|C|791
9DFE|1|1A|G|792
9DFE|1|1A|A|793
9DFE|1|1A|G|794
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 17
- 50S ribosomal protein L34
- Chain 1D
- 50S ribosomal protein L2
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