J3_9DFE_007

3D structure

PDB id

9DFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with lasso peptide lariocidin and protein Y at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CGAGCUA*UAG*CGAG

Length

14 nucleotides

Bulged bases

9DFE|1|1A|G|686, 9DFE|1|1A|G|792, 9DFE|1|1A|A|793

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

9DFE|1|1A|C|683
9DFE|1|1A|G|684
9DFE|1|1A|A|685
9DFE|1|1A|G|686
9DFE|1|1A|C|687
9DFE|1|1A|U|688
9DFE|1|1A|A|689
*
9DFE|1|1A|U|773
9DFE|1|1A|A|774
9DFE|1|1A|G|775
*
9DFE|1|1A|C|791
9DFE|1|1A|G|792
9DFE|1|1A|A|793
9DFE|1|1A|G|794

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 17

50S ribosomal protein L34

Chain 1D

50S ribosomal protein L2