J3_5J4D_047

3D structure

PDB id

5J4D (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CAAG*CGCAAAC*GUG

Length

14 nucleotides

Bulged bases

5J4D|1|GB|A|1609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5J4D_047 not in the Motif Atlas

Homologous match to J3_9DFE_011

Geometric discrepancy: 0.0633

The information below is about J3_9DFE_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_47341.1

Basepair signature

cWW-tHH-F-tHW-tHS-tWW-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

5J4D|1|GB|C|1306
5J4D|1|GB|A|1307
5J4D|1|GB|A|1308
5J4D|1|GB|G|1309
*
5J4D|1|GB|C|1605
5J4D|1|GB|G|1606
5J4D|1|GB|C|1607
5J4D|1|GB|A|1608
5J4D|1|GB|A|1609
5J4D|1|GB|A|1610
5J4D|1|GB|C|1611
*
5J4D|1|GB|G|1620
5J4D|1|GB|U|1621
5J4D|1|GB|G|1622

Current chains

Chain GB

25S ribosomal RNA

Nearby chains

Chain JC

50S ribosomal protein L34